Miyakogusa Predicted Gene

Lj0g3v0257529.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LH09_MEDTR 1163 70.4 81.7 (tr|G7LH09) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g066670 PE=4 SV=1
TAIR_pep AT5G55740.1 843 54.7 73.9 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:22561941-22564433 REVERSE LENGTH=830
Medicago Medtr8g066670.1 1174 70.4 81.7 | chlororespiratory reduction protein, putative | LC | chr8:27704772-27714873 | 20130731
Soybean Glyma06g23620.1 1110 71.4 84.5  
LJGI gnl|LJGI|DC597835 729 99.5 99.5 similar to UniRef100_A7PEW9 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0257529.2 length: 800 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.84 329-358
430-456
573-593
740-768
HMMPfam PF13041 PPR_2 9.7e-10 224-273
463-511
602-646
HMMTigr TIGR00756 PPR: 0.0029 199-227
227-261
329-361
430-457
465-498
500-533
602-634
637-662
ProfileScan PS51375 PPR 8.111 123-157
92-122
55-89
225-259
194-224
327-361
296-326
463-497
428-462
397-427
498-532
599-633
568-598
634-669
670-700
702-732
736-770
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00028 393-490
698-755
no_ID  
HMMPanther PTHR24015 FAMILY 3.2e-218 77-790
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 3.2e-218 77-790
Seg seg seg NA 29-41
superfamily SSF48452 TPR-like 0.0036 199-351
573-755
Wolf-PSORT
Lj0g3v0257529.2	chlo 9, cyto 3, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0257529.2