Miyakogusa Predicted Gene

Lj0g3v0255929.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MQ99_SOYBN 988 72.3 82.9 (tr|K7MQ99) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G29940.1 899 66.9 78.2 | Symbols: PDR3, ATPDR3 | pleiotropic drug resistance 3 | chr2:12760139-12766455 FORWARD LENGTH=1426

Medicago Medtr5g070320.1 988 73.3 82.7 | pleiotropic drug resistance subfamily G protein | HC | chr5:29768959-29781810 | 20130731

Soybean Glyma18g07080.1 969 71.2 81.9

LJGI gnl|LJGI|BP029778 841 100.0 100.0 similar to UniRef100_Q7PC88 Cluster: Probable pleiotropic drug resistance protein 3; n=1; Arabidopsis thaliana|Rep: Probable pleiotropic drug resistance protein 3 - Arabidopsis thaliana (Mouse-ear cress), partial (9%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0255929.1 length: 666 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 5.6e-12 113-241

ProfileScan PS50893 ABC_TRANSPORTER_2 14.913 61-313

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 2.1e-11 98-290

IPR013525 ABC-2 type transporter

Cellular Component GO:0016020 membrane

HMMPfam PF01061 ABC2_membrane 3e-53 387-599

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 4e-41 53-296

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.8e-44 85-298

HMMPanther PTHR19241 ATP-BINDING 0 12-666

HMMPanther PTHR19241:SF10 ATP-BINDING 0 12-666

Seg seg seg NA 177-193
522-540
633-644

Putative transmembrane regions

From To

TM segments
SOSUI 405 427

487 509

521 543

554 575

635 657

Wolf-PSORT

Lj0g3v0255929.1 plas 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0255929.1 Not targeted -38.270 -7.336 -1.949 49.33% -28.985

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MQ99_SOYBN	988	72.3	82.9	(tr\|K7MQ99) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G29940.1	899	66.9	78.2	\| Symbols: PDR3, ATPDR3 \| pleiotropic drug resistance 3 \| chr2:12760139-12766455 FORWARD LENGTH=1426
Medicago	Medtr5g070320.1	988	73.3	82.7	\| pleiotropic drug resistance subfamily G protein \| HC \| chr5:29768959-29781810 \| 20130731
Soybean	Glyma18g07080.1	969	71.2	81.9
LJGI	gnl\|LJGI\|BP029778	841	100.0	100.0	similar to UniRef100_Q7PC88 Cluster: Probable pleiotropic drug resistance protein 3; n=1; Arabidopsis thaliana\|Rep: Probable pleiotropic drug resistance protein 3 - Arabidopsis thaliana (Mouse-ear cress), partial (9%)

IPR003439	ABC transporter-like
Lj0g3v0255929.1				length: 666 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	5.6e-12	113-241
ProfileScan	PS50893	ABC_TRANSPORTER_2	14.913	61-313
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	2.1e-11	98-290
IPR013525	ABC-2 type transporter
Cellular Component	GO:0016020	membrane
HMMPfam	PF01061	ABC2_membrane	3e-53	387-599
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	4e-41	53-296
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.8e-44	85-298
HMMPanther	PTHR19241	ATP-BINDING	0	12-666
HMMPanther	PTHR19241:SF10	ATP-BINDING	0	12-666
Seg	seg	seg	NA	177-193 522-540 633-644