Miyakogusa Predicted Gene
- Lj0g3v0255249.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M338_SOYBN |
662 |
65.3 |
75.5 |
(tr|I1M338) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G53190.2 |
246 |
38.0 |
50.7 |
| Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494 |
| Medicago |
Medtr2g078450.1 |
748 |
71.2 |
80.7 |
| zinc finger, C3HC4 type (RING finger) protein | HC | chr2:32697439-32693328 | 20130731 |
| Soybean |
Glyma13g34790.1 |
629 |
65.7 |
76.7 |
|
| LJGI |
gnl|LJGI|TC75111 |
1622 |
99.9 |
99.9 |
similar to UniRef100_A9UNR8 Cluster: Predicted protein; n=1; Monosiga brevicollis MX1|Rep: Predicted protein - Monosiga brevicollis MX1, partial (10%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0255249.1 |
length: 507 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF13639 |
zf-RING_2 |
4.9e-13 |
453-497 |
| HMMSmart |
SM00184 |
Ring |
5.5e-05 |
455-495 |
| ProfileScan |
PS50089 |
ZF_RING_2 |
12.032 |
455-496 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
8.9e-15 |
450-498 |
| no_ID |
|
| HMMPanther |
PTHR22766 |
RING |
2.9e-57 |
379-500 |
| HMMPanther |
PTHR22766:SF28 |
SUBFAMILY |
2.9e-57 |
379-500 |
| superfamily |
SSF57850 |
RING/U-box |
1.5e-17 |
436-502 |
- Wolf-PSORT
Lj0g3v0255249.1 nucl 11, cyto 1, mito 1, plas 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0255249.1 |
|