| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | Q2HS37_MEDTR | 855 | 91.6 | 93.9 | (tr|Q2HS37) Nucleic acid binding NABP OS=Medicago truncatula GN=MTR_2g097670 PE=4 SV=1 |
| TAIR_pep | AT2G29200.1 | 700 | 76.1 | 84.4 | | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968 |
| Medicago | Medtr2g097670.2 | 855 | 91.6 | 93.9 | | pumilio Mpt5 protein, putative | HC | chr2:41717566-41723738 | 20130731 |
| Soybean | Glyma15g04060.2 | 848 | 92.3 | 93.2 | |
| LJGI | gnl|LJGI|TC62005 | 1744 | 98.4 | 98.4 | homologue to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP; n=1; Medicago truncatula|Rep: Nucleic acid binding NABP - Medicago truncatula (Barrel medic), partial (32%) |
| Lj0g3v0254439.1 | length: 449 aa. | |||
| IPR001313 | Pumilio RNA-binding repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003723 | RNA binding | ||
| HMMPfam | PF00806 | PUF | 6.8e-07 | 124-154 163-191 197-226 236-265 269-300 308-336 342-374 391-417 |
| HMMSmart | SM00025 | Pumilio-like | 8.7e-07 | 124-159 160-195 196-231 232-267 268-304 305-340 341-376 383-418 |
| ProfileScan | PS50302 | PUM | 10.017 | 124-159 160-195 196-231 232-267 268-304 305-340 341-376 377-418 |
| ProfileScan | PS50303 | PUM_HD | 131.372 | 104-444 |
| IPR011989 | Armadillo-like helical | |||
| Gene3D | G3DSA:1.25.10.10 | no description | 1e-137 | 106-444 |
| IPR012940 | Nucleic acid binding NABP | |||
| HMMPfam | PF07990 | NABP | 3.3e-60 | 1-123 |
| IPR016024 | Armadillo-type fold | |||
| Molecular Function | GO:0005488 | binding | ||
| superfamily | SSF48371 | ARM | 2.3e-119 | 104-442 |
| no_ID | ||||
| HMMPanther | PTHR12537 | RNA | 2.5e-250 | 1-441 |
| HMMPanther | PTHR12537:SF12 | PUMILIO | 2.5e-250 | 1-441 |
| Seg | seg | seg | NA | 58-69 |
Lj0g3v0254439.1 nucl 5, chlo 4, cyto 4
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj0g3v0254439.1 |