Miyakogusa Predicted Gene

Lj0g3v0253729.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J8S0_MEDTR 333 97.6 98.2 (tr|G7J8S0) Splicing factor 3B subunit OS=Medicago truncatula GN=MTR_3g065190 PE=4 SV=1
TAIR_pep AT2G18510.1 290 86.7 90.9 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Medicago Medtr3g065190.1 333 97.6 98.2 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr3:29411645-29406062 | 20130731
Soybean Glyma09g00310.1 325 95.8 95.8  
LJGI gnl|LJGI|TC69097 1725 100.0 100.0 similar to UniRef100_A7PUX9 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0253729.1 length: 289 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.3e-20 27-97
HMMSmart SM00360 RNA 3.9e-24 26-100
ProfileScan PS50102 RRM 17.268 25-104
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.9e-27 3-113
no_ID  
HMMPanther PTHR24011 FAMILY 5.3e-106 1-287
HMMPanther PTHR24011:SF0 SUBFAMILY 5.3e-106 1-287
Seg seg seg NA 167-189
193-238
243-288
superfamily SSF54928 RNA-binding 1.6e-25 24-122
Wolf-PSORT
Lj0g3v0253729.1	nucl 5, mito 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0253729.1