Miyakogusa Predicted Gene
- Lj0g3v0251319.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SBY9_LOTJA |
419 |
53.4 |
66.0 |
(tr|I3SBY9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G06240.1 |
91.3 |
24.8 |
43.3 |
| Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 |
| Medicago |
Medtr5g021880.1 |
339 |
43.9 |
60.4 |
| F-box protein interaction domain protein | LC | chr5:8537056-8534379 | 20130731 |
| Soybean |
Glyma18g34040.1 |
86.7 |
27.1 |
39.8 |
|
| LJGI |
gnl|LJGI|TC69956 |
1853 |
99.8 |
99.8 |
similar to UniRef100_A7Z3J5 Cluster: PenP; n=1; Bacillus amyloliquefaciens FZB42|Rep: PenP - Bacillus amyloliquefaciens (strain FZB42), partial (5%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0251319.1 |
length: 452 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
6.4e-09 |
55-95 |
| HMMSmart |
SM00256 |
A |
1.2e-06 |
59-98 |
| ProfileScan |
PS50181 |
FBOX |
11.644 |
53-98 |
| superfamily |
SSF81383 |
F-box |
5.6e-15 |
56-229 |
| IPR013187 |
F-box associated domain, type 3 |
| HMMPfam |
PF08268 |
FBA_3 |
2.8e-07 |
306-384 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
1.2e-31 |
200-426 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
1.9e-10 |
53-95 |
| HMMPanther |
PTHR31790 |
FAMILY |
4.1e-23 |
27-374 |
| HMMPanther |
PTHR31790:SF0 |
SUBFAMILY |
4.1e-23 |
27-374 |
| Seg |
seg |
seg |
NA |
154-170 |
- Wolf-PSORT
Lj0g3v0251319.1 mito 6, nucl 5, pero 3, chlo_mito 3, cyto_mito 3, mito_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0251319.1 |
|