Miyakogusa Predicted Gene
- Lj0g3v0251039.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
A5C966_VITVI |
338 |
71.4 |
78.2 |
(tr|A5C966) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035498 PE=2 SV=1 |
TAIR_pep |
AT2G01060.1 |
268 |
62.4 |
69.8 |
| Symbols: | myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286 |
Medicago |
Medtr2g027860.1 |
299 |
71.1 |
75.0 |
| myb-like transcription factor family protein | HC | chr2:10218231-10226352 | 20130731 |
Soybean |
Glyma09g02040.2 |
328 |
73.0 |
78.1 |
|
LJGI |
gnl|LJGI|TC80786 |
1461 |
99.9 |
99.9 |
similar to UniRef100_Q3LHL3 Cluster: MYB-CC type transfactor; n=1; Solanum tuberosum|Rep: MYB-CC type transfactor - Solanum tuberosum (Potato), partial (59%) |
- A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0251039.1 |
length: 245 aa. |
IPR001005 |
SANT/Myb domain |
method |
AccNumber |
shortName |
E-value |
location |
Molecular Function |
GO:0003682 |
chromatin binding |
|
|
HMMPfam |
PF00249 |
Myb_DNA-binding |
4e-16 |
17-68 |
IPR006447 |
Myb domain, plants |
HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
2e-25 |
15-70 |
IPR009057 |
Homeodomain-like |
Molecular Function |
GO:0003677 |
DNA binding |
|
|
Gene3D |
G3DSA:1.10.10.60 |
no description |
3.2e-31 |
14-70 |
superfamily |
SSF46689 |
Homeodomain-like |
1.8e-16 |
11-70 |
IPR017930 |
Myb domain |
ProfileScan |
PS51294 |
HTH_MYB |
12.073 |
12-72 |
IPR025756 |
MYB-CC type transcription factor, LHEQLE-containing domain |
HMMPfam |
PF14379 |
Myb_CC_LHEQLE |
3e-23 |
100-148 |
no_ID |
|
Coil |
coil |
coiled-coil |
NA |
104-125 |
HMMPanther |
PTHR31314 |
FAMILY |
3.6e-111 |
5-241 |
Seg |
seg |
seg |
NA |
116-132 |
- Wolf-PSORT
Lj0g3v0251039.1 nucl 10, cyto 2, chlo 1, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj0g3v0251039.1 |
|