Miyakogusa Predicted Gene

Lj0g3v0250239.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M8L9_SOYBN 1842 92.2 94.3 (tr|K7M8L9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G26560.1 1729 85.9 91.4 | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168
Medicago Medtr1g023985.1 1820 91.5 94.5 | ATP-dependent RNA helicase DHX8 | HC | chr1:7751166-7755800 | 20130731
Soybean Glyma14g40560.1 1687 88.5 90.7  
LJGI gnl|LJGI|BP043289 942 99.2 99.2 UniRef100_A7Q9V8 Cluster: Chromosome chr8 scaffold_68, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_68, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0250239.1 length: 1217 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 3.2e-11 807-894
HMMSmart SM00490 helicase 1.4e-18 790-894
ProfileScan PS51194 HELICASE_CTER 17.276 762-935
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 679-688
IPR003029 Ribosomal protein S1, RNA-binding domain
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00575 S1 9.3e-13 265-324
ProfileScan PS50126 S1 16.624 264-333
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 1e-28 956-1045
HMMSmart SM00847 Helicase 2.1e-41 955-1045
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.8e-07 570-720
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 1.1e-29 1080-1178
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 4.1e-16 265-343
superfamily SSF50249 Nucleic 2.9e-16 261-345
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.2e-32 562-746
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.821 574-737
IPR022967 RNA-binding domain, S1
HMMSmart SM00316 Ribosomal 2.7e-16 262-333
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.5e-129 554-1087
no_ID  
Coil coil coiled-coil NA 122-143
475-496
Gene3D G3DSA:3.40.50.300 no description 3e-11 563-721
760-905
HMMPanther PTHR18934 ATP-DEPENDENT 0 20-1217
Seg seg seg NA 3-27
96-121
147-230
232-251
430-445
485-495
879-892
Wolf-PSORT
Lj0g3v0250239.1	cyto 8, nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0250239.1