Miyakogusa Predicted Gene

Lj0g3v0249719.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KJS5_SOYBN 694 88.3 93.6 (tr|K7KJS5) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT2G34660.2 607 76.9 86.7 | Symbols: MRP2, ABCC2, AtABCC2 | multidrug resistance-associated protein 2 | chr2:14603267-14612387 FORWARD LENGTH=1623
Medicago Medtr3g011820.1 686 87.8 92.3 | multidrug resistance protein ABC transporter family protein | HC | chr3:3016723-3005103 | 20130731
Soybean Glyma04g15310.1 693 88.4 93.7  
LJGI gnl|LJGI|DC595106 731 97.1 97.1 similar to UniRef100_A7Q1C1 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0249719.1 length: 378 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 4.8e-22 1-192
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 5.5e-38 1-229
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 26.009 1-210
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.2e-29 188-370
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 4.5e-44 1-225
Gene3D G3DSA:3.40.50.300 no description 2.2e-30 246-376
HMMPanther PTHR24223 FAMILY 1.5e-275 1-377
HMMPanther PTHR24223:SF110PREDICTED: SIMILAR 1.5e-275 1-377
Putative transmembrane regions
  From To
TM segments
SOSUI		 33 55
61 83
152 174
179 201
Wolf-PSORT
Lj0g3v0249719.1	chlo 10, nucl 2, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0249719.1