Miyakogusa Predicted Gene
- Lj0g3v0247239.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
D7U3F2_VITVI |
266 |
84.6 |
94.0 |
(tr|D7U3F2) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05620 PE=4 SV=1 |
| TAIR_pep |
AT3G24730.1 |
256 |
78.1 |
90.7 |
| Symbols: | mRNA splicing factor, thioredoxin-like U5 snRNP | chr3:9030152-9030894 REVERSE LENGTH=159 |
| Medicago |
Medtr1g080840.1 |
226 |
90.1 |
95.0 |
| thioredoxin-like protein 4B | HC | chr1:35961547-35964407 | 20130731 |
| Soybean |
Glyma20g33110.1 |
261 |
82.8 |
91.4 |
|
| LJGI |
gnl|LJGI|TC72299 |
402 |
98.6 |
98.6 |
similar to UniRef100_A7QKT3 Cluster: Chromosome undetermined scaffold_114, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_114, whole genome shotgun sequence - Vitis vinifera (Grape), partial (47%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0247239.1 |
length: 151 aa. |
| IPR004123 |
mRNA splicing factor, thioredoxin-like U5 snRNP |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005681 |
spliceosomal complex |
|
|
| Biological Process |
GO:0007067 |
mitosis |
|
|
| HMMPIR |
PIRSF017199 |
Thioredoxin-like |
4.2e-73 |
1-144 |
| HMMPanther |
PTHR12052 |
THIOREDOXIN-LIKE |
2e-91 |
2-144 |
| HMMPfam |
PF02966 |
DIM1 |
8.1e-49 |
4-137 |
| IPR012336 |
Thioredoxin-like fold |
| Gene3D |
G3DSA:3.40.30.10 |
no description |
6.2e-51 |
1-144 |
| superfamily |
SSF52833 |
Thioredoxin-like |
5e-25 |
2-140 |
| no_ID |
|
| HMMPanther |
PTHR12052:SF4 |
THIOREDOXIN-LIKE |
2e-91 |
2-144 |
- Wolf-PSORT
Lj0g3v0247239.1 cyto 9, nucl 2, mito 1, plas 1, E.R. 1, cysk_nucl 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0247239.1 |
|