Miyakogusa Predicted Gene

Lj0g3v0246299.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M710_SOYBN 442 76.5 82.3 (tr|I1M710) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G08560.2 328 53.2 68.2 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589
Medicago Medtr5g090420.1 440 74.8 81.6 | transducin/WD40 repeat protein | HC | chr5:39373338-39377755 | 20130731
Soybean Glyma14g03550.2 442 76.5 82.3  
LJGI gnl|LJGI|TC61565 1715 99.5 99.5 weakly similar to UniRef100_A7QNP3 Cluster: Chromosome undetermined scaffold_133, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_133, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0246299.1 length: 303 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4e-09 256-293
HMMSmart SM00320 WD40 1.2e-08 254-293
ProfileScan PS50082 WD_REPEATS_2 13.115 261-294
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 8.078 62-94
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 2.5e-05 95-152
ProfileScan PS50897 CTLH 10.072 95-152
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.9e-09 255-293
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.234 261-302
superfamily SSF50978 WD40 2.1e-09 212-294
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 280-294
no_ID  
HMMPanther PTHR22838 WD 4.5e-70 35-299
Seg seg seg NA 16-36
195-206
Wolf-PSORT
Lj0g3v0246299.1	cyto 5, nucl 4, mito 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0246299.1