Miyakogusa Predicted Gene
- Lj0g3v0246249.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M409_SOYBN |
657 |
85.2 |
92.1 |
(tr|K7M409) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT2G07680.1 |
515 |
70.9 |
78.6 |
| Symbols: ATMRP11, MRP11, ABCC13 | multidrug resistance-associated protein 11 | chr2:3514774-3522491 FORWARD LENGTH=1404 |
| Medicago |
Medtr2g105190.1 |
638 |
85.5 |
92.3 |
| multidrug resistance-associated protein ABC domain protein | HC | chr2:45361236-45347509 | 20130731 |
| Soybean |
Glyma13g44750.1 |
658 |
85.2 |
92.1 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0246249.2 |
length: 365 aa. |
| IPR003439 |
ABC transporter-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Molecular Function |
GO:0016887 |
ATPase activity |
|
|
| HMMPfam |
PF00005 |
ABC_tran |
7.3e-11 |
202-310 |
| ProfileScan |
PS50893 |
ABC_TRANSPORTER_2 |
16.767 |
157-365 |
| IPR003593 |
AAA+ ATPase domain |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
1.5e-11 |
187-361 |
| IPR011527 |
ABC transporter, transmembrane domain, type 1 |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| superfamily |
SSF90123 |
ABC |
9.5e-12 |
1-150 |
| IPR017871 |
ABC transporter, conserved site |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Molecular Function |
GO:0016887 |
ATPase activity |
|
|
| PatternScan |
PS00211 |
ABC_TRANSPORTER_1 |
NA |
285-299 |
| IPR017940 |
ABC transporter, integral membrane type 1 |
| ProfileScan |
PS50929 |
ABC_TM1F |
15.430 |
1-113 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
4.5e-41 |
177-362 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1560.10 |
no description |
1.7e-06 |
4-126 |
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.8e-52 |
175-363 |
| HMMPanther |
PTHR24223 |
FAMILY |
1.9e-222 |
1-365 |
| HMMPanther |
PTHR24223:SF5 |
SUBFAMILY |
1.9e-222 |
1-365 |
| Seg |
seg |
seg |
NA |
117-126 |
- Wolf-PSORT
Lj0g3v0246249.2 chlo 4, E.R. 3, nucl 2, plas 2, nucl_plas 2, E.R._vacu 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0246249.2 |
|