Miyakogusa Predicted Gene
- Lj0g3v0246249.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M409_SOYBN |
511 |
84.3 |
92.3 |
(tr|K7M409) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT2G07680.1 |
356 |
62.4 |
74.9 |
| Symbols: ATMRP11, MRP11, ABCC13 | multidrug resistance-associated protein 11 | chr2:3514774-3522491 FORWARD LENGTH=1404 |
| Medicago |
Medtr2g105190.1 |
497 |
81.8 |
90.9 |
| multidrug resistance-associated protein ABC domain protein | HC | chr2:45361236-45347509 | 20130731 |
| Soybean |
Glyma13g44750.1 |
513 |
84.3 |
92.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0246249.1 |
length: 341 aa. |
| IPR003439 |
ABC transporter-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Molecular Function |
GO:0016887 |
ATPase activity |
|
|
| HMMPfam |
PF00005 |
ABC_tran |
3.6e-08 |
22-100 |
| IPR017871 |
ABC transporter, conserved site |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Molecular Function |
GO:0016887 |
ATPase activity |
|
|
| PatternScan |
PS00211 |
ABC_TRANSPORTER_1 |
NA |
75-89 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.2e-26 |
15-160 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
2.1e-33 |
17-167 |
| HMMPanther |
PTHR24223 |
FAMILY |
2.8e-141 |
10-306 |
| HMMPanther |
PTHR24223:SF5 |
SUBFAMILY |
2.8e-141 |
10-306 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
8 |
30 |
| 234 |
256 |
| 284 |
306 |
- Wolf-PSORT
Lj0g3v0246249.1 plas 8, vacu 2, E.R. 2, E.R._vacu 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0246249.1 |
|