Miyakogusa Predicted Gene

Lj0g3v0245039.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NGM0_SOYBN 723 80.5 90.4 (tr|I1NGM0) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT5G62190.1 625 70.9 84.5 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980542-24983879 REVERSE LENGTH=671
Medicago Medtr6g056080.1 728 82.1 90.1 | DEAD-box ATP-dependent RNA helicase | HC | chr6:20125418-20119486 | 20130731
Soybean Glyma20g29060.1 721 80.5 90.4  
LJGI gnl|LJGI|TC82732 214 99.1 99.1 weakly similar to UniRef100_A7QGV9 Cluster: Chromosome chr16 scaffold_94, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_94, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0245039.1 length: 425 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 53-61
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 5.4e-23 175-241
HMMSmart SM00490 helicase 1.5e-25 164-241
ProfileScan PS51194 HELICASE_CTER 19.970 138-280
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 7.7e-25 2-97
IPR012562 GUCT
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF08152 GUCT 1.9e-30 330-425
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.444 1-109
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.6e-53 1-264
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.2e-41 2-120
121-271
HMMPanther PTHR24031 FAMILY 2.8e-176 1-346
HMMPanther PTHR24031:SF107HELICASE CONSERVED 2.8e-176 1-346
Seg seg seg NA 320-328
Wolf-PSORT
Lj0g3v0245039.1	cyto 7, chlo 5, nucl 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0245039.1