Miyakogusa Predicted Gene

Lj0g3v0244519.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL M5W8Q7_PRUPE 133 31.8 43.1 (tr|M5W8Q7) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024918mg PE=4 SV=1

TAIR_pep AT5G39710.1 116 31.9 49.3 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747

Medicago Medtr1g033960.1 127 38.5 53.5 | PPR containing plant-like protein | HC | chr1:12282466-12279095 | 20130731

Soybean Glyma20g01300.1 128 38.2 51.0

LJGI gnl|LJGI|TC81578 1199 99.2 99.2 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible protein-like; n=2; Arabidopsis thaliana|Rep: Salt-inducible protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0244519.1 length: 230 aa.

IPR002885 Pentatricopeptide repeat

method AccNumber shortName E-value location

HMMPfam PF01535 PPR 0.049 54-74

HMMPfam PF13041 PPR_2 4.6e-14 76-124
146-196

HMMTigr TIGR00756 PPR: 6.9e-05 48-77
82-113
115-148

ProfileScan PS51375 PPR 5.766 77-111
42-76
112-146
147-183
184-218

no_ID

Coil coil coiled-coil NA 87-108

HMMPanther PTHR24015 FAMILY 5.3e-45 11-202

HMMPanther PTHR24015:SF0 SUBFAMILY 5.3e-45 11-202

Seg seg seg NA 90-103

Wolf-PSORT

Lj0g3v0244519.1 chlo 11, vacu 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0244519.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	M5W8Q7_PRUPE	133	31.8	43.1	(tr\|M5W8Q7) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024918mg PE=4 SV=1
TAIR_pep	AT5G39710.1	116	31.9	49.3	\| Symbols: EMB2745 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:15895729-15897972 FORWARD LENGTH=747
Medicago	Medtr1g033960.1	127	38.5	53.5	\| PPR containing plant-like protein \| HC \| chr1:12282466-12279095 \| 20130731
Soybean	Glyma20g01300.1	128	38.2	51.0
LJGI	gnl\|LJGI\|TC81578	1199	99.2	99.2	weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible protein-like; n=2; Arabidopsis thaliana\|Rep: Salt-inducible protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (5%)

IPR002885	Pentatricopeptide repeat
Lj0g3v0244519.1				length: 230 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01535	PPR	0.049	54-74
HMMPfam	PF13041	PPR_2	4.6e-14	76-124 146-196
HMMTigr	TIGR00756	PPR:	6.9e-05	48-77 82-113 115-148
ProfileScan	PS51375	PPR	5.766	77-111 42-76 112-146 147-183 184-218
no_ID
Coil	coil	coiled-coil	NA	87-108
HMMPanther	PTHR24015	FAMILY	5.3e-45	11-202
HMMPanther	PTHR24015:SF0	SUBFAMILY	5.3e-45	11-202
Seg	seg	seg	NA	90-103