| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7IUV8_MEDTR | 603 | 72.8 | 80.9 | (tr|G7IUV8) Polygalacturonase OS=Medicago truncatula GN=MTR_2g103650 PE=4 SV=1 |
| TAIR_pep | AT5G17200.1 | 318 | 41.4 | 57.2 | | Symbols: | Pectin lyase-like superfamily protein | chr5:5653524-5655336 REVERSE LENGTH=421 |
| Medicago | Medtr2g103650.1 | 603 | 72.8 | 80.9 | | polygalacturonase/glycoside hydrolase family protein | HC | chr2:44629212-44625414 | 20130731 |
| Soybean | Glyma15g01170.1 | 537 | 72.7 | 81.8 | |
| LJGI | gnl|LJGI|TC80731 | 56.0 | 90.9 | 90.9 | similar to UniRef100_Q2KMJ7 Cluster: PGN; n=2; Glycine max|Rep: PGN - Glycine max (Soybean), partial (35%) |
| Lj0g3v0243179.1 | length: 410 aa. | |||
| IPR000743 | Glycoside hydrolase, family 28 | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0004650 | polygalacturonase activity | ||
| Biological Process | GO:0005975 | carbohydrate metabolic process | ||
| HMMPfam | PF00295 | Glyco_hydro_28 | 7.9e-88 | 66-395 |
| PatternScan | PS00502 | POLYGALACTURONASE | NA | 249-262 |
| IPR006626 | Parallel beta-helix repeat | |||
| HMMSmart | SM00710 | Parallel | 9.3e+03 | 192-218 219-240 272-293 301-322 368-389 |
| IPR011050 | Pectin lyase fold/virulence factor | |||
| superfamily | SSF51126 | Pectin | 9.1e-110 | 15-408 |
| IPR012334 | Pectin lyase fold | |||
| Gene3D | G3DSA:2.160.20.10 | no description | 5.1e-113 | 19-408 |
| no_ID | ||||
| HMMPanther | PTHR31736 | FAMILY | 1.9e-153 | 13-408 |
| HMMPanther | PTHR31736:SF0 | SUBFAMILY | 1.9e-153 | 13-408 |
| Seg | seg | seg | NA | 14-25 253-267 |
| From | To | |
|---|---|---|
| TM segments SOSUI |
8 | 30 |
Lj0g3v0243179.1 cyto 5, nucl 3, cyto_E.R. 3, extr 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj0g3v0243179.1 |