Miyakogusa Predicted Gene

Lj0g3v0242929.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JBC1_MEDTR 1169 82.2 88.3 (tr|G7JBC1) Protein transport protein Sec23 OS=Medicago truncatula GN=MTR_3g084740 PE=4 SV=1
TAIR_pep AT1G05520.1 1080 73.8 83.1 | Symbols: | Sec23/Sec24 protein transport family protein | chr1:1631126-1635703 REVERSE LENGTH=783
Medicago Medtr3g084740.2 1169 82.2 88.3 | protein transporter Sec23-like protein | HC | chr3:38270164-38263958 | 20130731
Soybean Glyma18g00670.1 1149 80.8 87.9  
LJGI gnl|LJGI|TC77368 2032 100.0 100.0 similar to UniRef100_A7QQS7 Cluster: Chromosome undetermined scaffold_144, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_144, whole genome shotgun sequence - Vitis vinifera (Grape), partial (55%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0242929.1 length: 706 aa.
IPR002035 von Willebrand factor, type A
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:3.40.50.410 no description 1.5e-103 127-399
IPR006895 Zinc finger, Sec23/Sec24-type
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Molecular Function GO:0008270 zinc ion binding    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04810 zf-Sec23_Sec24 1.1e-15 56-95
superfamily SSF82919 Zn-finger 5.1e-21 47-121
IPR006896 Sec23/Sec24, trunk domain
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04811 Sec23_trunk 6.1e-70 125-395
IPR006900 Sec23/Sec24, helical domain
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04815 Sec23_helical 1.4e-30 525-625
superfamily SSF81811 Helical 5e-48 524-626
IPR007123 Gelsolin domain
HMMPfam PF00626 Gelsolin 6.7e-06 636-690
IPR012990 Sec23/Sec24 beta-sandwich
HMMPfam PF08033 Sec23_BS 7.6e-31 406-509
no_ID  
Gene3D G3DSA:2.60.40.1670 no description 4.8e-34 403-510
Gene3D G3DSA:3.40.20.10 no description 3.6e-25 626-691
HMMPanther PTHR11141 PROTEIN 0 1-690
Seg seg seg NA 270-282
superfamily SSF53300 vWA-like 7.9e-87 127-397
superfamily SSF81995 beta-sandwich 7.4e-58 3-523
superfamily SSF82754 C-terminal, 2e-18 627-690
Wolf-PSORT
Lj0g3v0242929.1	cyto 7, nucl 5, chlo 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0242929.1