Miyakogusa Predicted Gene
- Lj0g3v0242199.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7K8P1_SOYBN |
342 |
71.2 |
78.6 |
(tr|K7K8P1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G39130.1 |
275 |
57.8 |
70.3 |
| Symbols: | Transmembrane amino acid transporter family protein | chr2:16323171-16326744 REVERSE LENGTH=550 |
| Medicago |
Medtr1g050328.1 |
367 |
73.3 |
84.8 |
| transmembrane amino acid transporter family protein | HC | chr1:19244519-19240885 | 20130731 |
| Soybean |
Glyma20g32260.1 |
301 |
65.0 |
75.3 |
|
| LJGI |
gnl|LJGI|GO006093 |
83.8 |
84.2 |
84.2 |
similar to UniRef100_A7PI10 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0242199.1 |
length: 244 aa. |
| IPR013057 |
Amino acid transporter, transmembrane |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01490 |
Aa_trans |
5.2e-17 |
155-241 |
| no_ID |
|
| HMMPanther |
PTHR22950 |
AMINO |
5.2e-31 |
20-243 |
| HMMPanther |
PTHR22950:SF9 |
SUBFAMILY |
5.2e-31 |
20-243 |
| Seg |
seg |
seg |
NA |
81-94 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
153 |
175 |
| 186 |
208 |
| 220 |
242 |
- Wolf-PSORT
Lj0g3v0242199.1 nucl 5.5, golg 5, cyto_nucl 4, cyto 1.5, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0242199.1 |
|