Miyakogusa Predicted Gene
- Lj0g3v0240829.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q2HS67_MEDTR |
159 |
30.3 |
46.4 |
(tr|Q2HS67) Cyclin-like F-box; F-box protein interaction domain OS=Medicago truncatula GN=MTR_4g024890 PE=4 SV=1 |
| TAIR_pep |
AT3G23880.1 |
92.4 |
28.0 |
42.5 |
| Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364 |
| Medicago |
Medtr4g024890.1 |
159 |
30.3 |
46.4 |
| F-box protein interaction domain protein | LC | chr4:8444386-8443226 | 20130731 |
| Soybean |
Glyma19g06670.1 |
154 |
33.2 |
48.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0240829.1 |
length: 401 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
0.00041 |
2-33 |
| ProfileScan |
PS50181 |
FBOX |
9.127 |
1-34 |
| superfamily |
SSF81383 |
F-box |
6e-10 |
1-234 |
| IPR006527 |
F-box associated domain, type 1 |
| HMMPfam |
PF07734 |
FBA_1 |
1.1e-08 |
224-338 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
4.6e-05 |
2-29 |
| Seg |
seg |
seg |
NA |
341-356 |
- Wolf-PSORT
Lj0g3v0240829.1 mito 7.5, cyto_mito 4.5, chlo 4, nucl 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0240829.1 |
|