Miyakogusa Predicted Gene

Lj0g3v0240409.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SXG7_LOTJA 448 93.7 93.7 (tr|I3SXG7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G21320.2 236 53.1 64.7 | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253
Medicago Medtr6g034835.1 352 72.3 83.5 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr6:12131803-12138897 | 20130731
Soybean Glyma02g09230.1 388 76.9 82.9  
LJGI gnl|LJGI|TC60605 1499 100.0 100.0 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1; Medicago truncatula|Rep: RNA-binding protein - Medicago truncatula (Barrel medic), partial (76%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0240409.2 length: 251 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 6.3e-10 154-222
HMMSmart SM00360 RNA 2.8e-06 153-227
ProfileScan PS50102 RRM 12.032 152-238
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 3.7e-19 144-237
IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Molecular Function GO:0017069 snRNA binding    
HMMPanther PTHR10501 U1 1.7e-26 42-251
no_ID  
HMMPanther PTHR10501:SF0 SMALL 1.7e-26 42-251
Seg seg seg NA 86-99
superfamily SSF54928 RNA-binding 1.9e-13 108-239
Wolf-PSORT
Lj0g3v0240409.2	nucl 5, chlo 3, pero 3, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0240409.2