Miyakogusa Predicted Gene
- Lj0g3v0239789.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KVX1_SOYBN |
230 |
92.2 |
97.4 |
(tr|K7KVX1) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G47780.1 |
207 |
82.6 |
92.2 |
| Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935 |
| Medicago |
Medtr4g108210.1 |
223 |
87.1 |
94.0 |
| ABC transporter A family protein | HC | chr4:44879386-44885074 | 20130731 |
| Soybean |
Glyma06g20370.1 |
229 |
92.2 |
97.4 |
|
| LJGI |
gnl|LJGI|TC62362 |
571 |
95.7 |
95.7 |
similar to UniRef100_A7QI68 Cluster: Chromosome chr17 scaffold_101, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_101, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0239789.1 |
length: 116 aa. |
| IPR026082 |
ABC transporter A, ABCA |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR19229 |
ATP-BINDING |
1.5e-83 |
1-116 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
4.5e-22 |
1-77 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
3.8e-25 |
1-98 |
| HMMPanther |
PTHR19229:SF7 |
ABC |
1.5e-83 |
1-116 |
| HMMPfam |
PF13304 |
AAA_21 |
3.3e-07 |
1-54 |
- Wolf-PSORT
Lj0g3v0239789.1 nucl 6, chlo 2, vacu 2, cyto 1, mito 1, plas 1, extr 1, E.R._vacu 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0239789.1 |
|