Miyakogusa Predicted Gene

Lj0g3v0239369.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L9N1_SOYBN 1524 74.0 81.1 (tr|K7L9N1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G24190.2 937 51.5 64.7 | Symbols: SNL3 | SIN3-like 3 | chr1:8563858-8569927 REVERSE LENGTH=1326
Medicago Medtr8g062700.1 1516 72.1 80.9 | paired amphipathic helix SIN3-like protein | HC | chr8:26215827-26198402 | 20130731
Soybean Glyma08g40390.1 1391 69.5 76.3  
LJGI gnl|LJGI|DC599945 575 100.0 100.0 similar to UniRef100_A7Q2L0 Cluster: Chromosome chr1 scaffold_46, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_46, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0239369.2 length: 1049 aa.
IPR003822 Paired amphipathic helix
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:1.20.1160.11 no description 2e-12 32-103
117-189
334-396
HMMPfam PF02671 PAH 4.4e-16 56-102
143-188
350-395
ProfileScan PS51477 PAH 11.572 34-104
120-190
319-398
superfamily SSF47762 PAH2 4.3e-15 29-104
115-190
327-400
IPR013194 Histone deacetylase interacting
HMMPfam PF08295 Sin3_corepress 3.5e-42 486-581
HMMSmart SM00761 Histone 1.2e-60 486-586
no_ID  
Coil coil coiled-coil NA 252-273
559-580
HMMPanther PTHR12346 SIN3B-RELATED 7.2e-296 5-1048
Seg seg seg NA 251-281
441-450
684-695
1020-1034
Wolf-PSORT
Lj0g3v0239369.2	nucl 8, chlo 3, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0239369.2