Miyakogusa Predicted Gene

Lj0g3v0238669.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J6Y1_MEDTR 564 78.0 84.8 (tr|G7J6Y1) Poly(A)-binding protein OS=Medicago truncatula GN=MTR_3g102040 PE=4 SV=1
TAIR_pep AT4G34110.1 489 66.8 81.5 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Medicago Medtr3g102040.1 564 78.0 84.8 | polyadenylate-binding protein | HC | chr3:47012095-47003272 | 20130731
Soybean Glyma07g33860.3 543 74.4 85.9  
LJGI gnl|LJGI|TC59012 1037 100.0 100.0 similar to UniRef100_Q00M91 Cluster: Poly(A)-binding protein; n=1; Glycine max|Rep: Poly(A)-binding protein - Glycine max (Soybean), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0238669.1 length: 359 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.4e-16 22-92
110-178
202-270
305-359
HMMSmart SM00360 RNA 2.9e-07 21-94
109-181
201-273
304-359
ProfileScan PS50102 RRM 16.398 20-98
108-185
200-277
303-359
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 0.61 21-94
109-181
201-273
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
Molecular Function GO:0003723 RNA binding    
HMMTigr TIGR01628 PABP-1234: 5.8e-160 21-359
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.3e-24 16-101
102-199
200-282
294-357
no_ID  
Coil coil coiled-coil NA 276-297
HMMPanther PTHR24011 FAMILY 4.1e-173 1-359
HMMPanther PTHR24011:SF45 SUBFAMILY 4.1e-173 1-359
Seg seg seg NA 274-287
superfamily SSF54928 RNA-binding 1.9e-42 19-192
199-359
Wolf-PSORT
Lj0g3v0238669.1	nucl 10, cysk 2, chlo 1, plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0238669.1