Miyakogusa Predicted Gene

Lj0g3v0236989.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JRS8_SOYBN 814 69.0 81.9 (tr|I1JRS8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G04760.1 774 70.1 85.9 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:1303884-1305692 REVERSE LENGTH=602
Medicago Medtr1g080110.1 787 65.6 78.4 | pentatricopeptide (PPR) repeat protein | HC | chr1:35577637-35579719 | 20130731
Soybean Glyma03g41170.1 814 69.0 81.9  
LJGI gnl|LJGI|GO024945 954 99.0 99.0 weakly similar to UniRef100_A7QMW3 Cluster: Chromosome chr14 scaffold_128, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_128, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0236989.1 length: 574 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 1.4e-08 197-228
232-260
336-368
HMMPfam PF13041 PPR_2 5.8e-12 130-179
270-319
375-422
445-494
HMMTigr TIGR00756 PPR: 3.1e-06 74-98
134-167
168-202
203-236
239-272
273-307
308-342
343-377
380-412
448-481
483-517
ProfileScan PS51375 PPR 7.936 62-96
131-165
97-127
166-200
201-235
236-270
271-305
306-340
341-375
376-410
411-445
446-480
481-515
516-550
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.3e-07 271-469
no_ID  
HMMPanther PTHR24015 FAMILY 1.2e-152 68-554
HMMPanther PTHR24015:SF0 SUBFAMILY 1.2e-152 68-554
ProfileScan PS51257 PROKAR_LIPOPROTEIN 5.000 1-28
Seg seg seg NA 37-54
superfamily SSF48452 TPR-like 0.0054 94-195
376-459
Wolf-PSORT
Lj0g3v0236989.1	chlo 11, extr 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0236989.1