Miyakogusa Predicted Gene
- Lj0g3v0236409.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7LG09_MEDTR |
762 |
85.7 |
94.0 |
(tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3 SV=1 |
| TAIR_pep |
AT2G40030.1 |
548 |
61.0 |
78.4 |
| Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976 |
| Medicago |
Medtr8g038990.1 |
764 |
85.7 |
94.0 |
| DNA-directed RNA polymerase | HC | chr8:14459096-14475944 | 20130731 |
| Soybean |
Glyma15g37710.1 |
760 |
85.5 |
92.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0236409.1 |
length: 435 aa. |
| IPR000722 |
RNA polymerase, alpha subunit |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPfam |
PF00623 |
RNA_pol_Rpb1_2 |
7.8e-31 |
93-245 |
| IPR006592 |
RNA polymerase, N-terminal |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMSmart |
SM00663 |
RNA |
4.6e-31 |
1-274 |
| IPR007066 |
RNA polymerase Rpb1, domain 3 |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPfam |
PF04983 |
RNA_pol_Rpb1_3 |
7.6e-10 |
249-394 |
| IPR009010 |
Aspartate decarboxylase-like domain |
| Gene3D |
G3DSA:2.40.40.20 |
no description |
1.9e-26 |
176-248 |
| no_ID |
|
| HMMPanther |
PTHR19376 |
DNA-DIRECTED |
7.4e-196 |
1-427 |
| HMMPanther |
PTHR19376:SF7 |
DNA-DIRECTED |
7.4e-196 |
1-427 |
| superfamily |
SSF64484 |
beta |
1.2e-66 |
82-426 |
- Wolf-PSORT
Lj0g3v0236409.1 mito 5.5, nucl 4, cyto_mito 3.5, plas 1.5, golg_plas 1.5, chlo 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0236409.1 |
|