Miyakogusa Predicted Gene

Lj0g3v0236079.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IP95_MEDTR 700 74.2 82.1 (tr|G7IP95) RNA-binding protein, putative OS=Medicago truncatula GN=MTR_2g026180 PE=4 SV=1
TAIR_pep AT3G07810.1 398 63.6 74.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494
Medicago Medtr2g026180.2 698 74.3 82.0 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr2:9465398-9461370 | 20130731
Soybean Glyma02g47690.2 482 56.8 65.3  
LJGI gnl|LJGI|TC58641 2823 99.9 99.9 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined scaffold_383, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_383, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0236079.1 length: 476 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1e-18 8-75
110-176
HMMSmart SM00360 RNA 7.7e-25 7-78
109-181
ProfileScan PS50102 RRM 18.564 6-82
108-185
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.1e-25 5-87
92-191
no_ID  
HMMPanther PTHR24012 FAMILY 1.5e-130 1-441
HMMPanther PTHR24012:SF27 SUBFAMILY 1.5e-130 1-441
Seg seg seg NA 88-105
342-359
superfamily SSF54928 RNA-binding 1.3e-24 102-204
1-101
Wolf-PSORT
Lj0g3v0236079.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0236079.1