Miyakogusa Predicted Gene

Lj0g3v0235899.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5VX70_PRUPE 371 58.0 71.3 (tr|M5VX70) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019362mg PE=4 SV=1
TAIR_pep AT1G19720.1 163 30.5 53.1 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6819926-6822610 REVERSE LENGTH=894
Medicago Medtr2g016780.1 167 31.9 53.8 | editing factor, putative | HC | chr2:5197710-5195940 | 20130731
Soybean Glyma17g20230.1 270 78.3 84.0  
LJGI gnl|LJGI|FS326911 52.0 96.7 96.7 similar to UniRef100_A7PRT7 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0235899.1 length: 319 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1.4e-05 68-97
235-264
HMMPfam PF12854 PPR_1 3.4e-10 197-228
HMMPfam PF13812 PPR_3 7.5e-05 2-30
139-167
HMMTigr TIGR00756 PPR: 1.1e-05 139-168
169-203
205-230
235-269
ProfileScan PS51375 PPR 6.785 1-33
65-99
34-64
167-201
136-166
202-236
237-267
no_ID  
HMMPanther PTHR24015 FAMILY 1.7e-77 2-319
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.7e-77 2-319
Seg seg seg NA 120-135
Wolf-PSORT
Lj0g3v0235899.1	chlo 11, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0235899.1