Miyakogusa Predicted Gene
- Lj0g3v0234959.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SIC1_LOTJA |
205 |
84.1 |
84.9 |
(tr|I3SIC1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G40290.1 |
202 |
87.2 |
88.0 |
| Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344 |
| Medicago |
Medtr3g071550.1 |
201 |
82.5 |
84.1 |
| eukaryotic translation initiation factor 2 alpha | HC | chr3:32110879-32105937 | 20130731 |
| Soybean |
Glyma18g02820.1 |
202 |
82.5 |
83.3 |
|
| LJGI |
gnl|LJGI|TC73164 |
698 |
100.0 |
100.0 |
similar to UniRef100_A7Q3N2 Cluster: Chromosome chr13 scaffold_48, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_48, whole genome shotgun sequence - Vitis vinifera (Grape), partial (97%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0234959.1 |
length: 123 aa. |
| IPR003029 |
Ribosomal protein S1, RNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| HMMPfam |
PF00575 |
S1 |
1.3e-13 |
8-81 |
| ProfileScan |
PS50126 |
S1 |
15.904 |
10-81 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
5.1e-38 |
1-85 |
| superfamily |
SSF50249 |
Nucleic |
7.6e-19 |
2-87 |
| IPR022967 |
RNA-binding domain, S1 |
| HMMSmart |
SM00316 |
Ribosomal |
4.7e-11 |
8-81 |
| IPR024054 |
Translation initiation factor 2, alpha subunit, middle domain |
| Gene3D |
G3DSA:1.10.150.190 |
no description |
9.3e-14 |
86-117 |
| superfamily |
SSF116742 |
eIF2alpha |
1.3e-11 |
83-117 |
| no_ID |
|
| HMMPanther |
PTHR10602 |
EUKARYOTIC |
2.8e-75 |
1-117 |
| HMMPanther |
PTHR10602:SF0 |
EUKARYOTIC |
2.8e-75 |
1-117 |
| Seg |
seg |
seg |
NA |
44-56 |
- Wolf-PSORT
Lj0g3v0234959.1 cyto 8, nucl 2, extr 2, chlo 1, golg 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0234959.1 |
|