Miyakogusa Predicted Gene

Lj0g3v0228969.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KFU7_SOYBN 636 72.6 78.9 (tr|I1KFU7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G55620.1 531 60.3 72.3 | Symbols: CLC-F, ATCLC-F, CLCF | chloride channel F | chr1:20787338-20790313 REVERSE LENGTH=585
Medicago Medtr3g009530.2 647 75.2 78.6 | ClC chloride channel family protein | HC | chr3:2088332-2079303 | 20130731
Soybean Glyma06g47910.1 636 72.6 78.9  
LJGI gnl|LJGI|TC70813 896 96.6 96.6 similar to UniRef100_A7QQF5 Cluster: Chromosome undetermined scaffold_142, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_142, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0228969.1 length: 444 aa.
IPR000644 Cystathionine beta-synthase, core
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00571 CBS 0.00025 270-322
362-407
HMMSmart SM00116 Domain 0.69 277-325
362-418
ProfileScan PS51371 CBS 8.933 274-331
359-426
IPR001807 Chloride channel, voltage gated
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
FPrintScan PR00762 CLCHANNEL 1.9e-11 112-132
153-169
171-190
HMMPfam PF00654 Voltage_CLC 9.8e-39 5-202
IPR014743 Chloride channel, core
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0055085 transmembrane transport    
Gene3D G3DSA:1.10.3080.10 no description 3.4e-44 5-207
superfamily SSF81340 Clc 9.5e-39 6-227
no_ID  
Gene3D G3DSA:3.10.580.10 no description 1.3e-20 268-411
HMMPanther PTHR11689 CHLORIDE 1.5e-211 5-444
HMMPanther PTHR11689:SF50 ORF 1.5e-211 5-444
Seg seg seg NA 51-62
124-136
252-266
325-336
superfamily SSF54631 CBS-domain 0.00014 268-334
338-423
Putative transmembrane regions
  From To
TM segments
SOSUI		 7 29
44 66
88 110
123 145
157 179
185 207
Wolf-PSORT
Lj0g3v0228969.1	plas 9, vacu 2, cyto 1, extr 1, E.R. 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0228969.1