Miyakogusa Predicted Gene

Lj0g3v0225609.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SB42_LOTJA 365 90.0 90.0 (tr|I3SB42) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G65260.1 267 76.0 83.8 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220
Medicago Medtr4g094260.1 327 81.2 85.6 | polyadenylate-binding protein II | HC | chr4:37371600-37377016 | 20130731
Soybean Glyma15g06030.1 318 80.7 83.2  
LJGI gnl|LJGI|TC57394 1201 100.0 100.0 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein II-like - Brassica campestris (Field mustard), partial (75%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0225609.1 length: 200 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 6.4e-18 73-141
HMMSmart SM00360 RNA 5.3e-23 72-143
ProfileScan PS50102 RRM 16.944 71-147
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.5e-24 46-144
no_ID  
Coil coil coiled-coil NA 14-49
HMMPanther PTHR23365 POLY-A 1.6e-53 1-200
Seg seg seg NA 11-20
172-181
superfamily SSF54928 RNA-binding 8e-25 54-166
Wolf-PSORT
Lj0g3v0225609.1	chlo 4, nucl 4, cyto 3, mito 1, plas 1, extr 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0225609.1