Miyakogusa Predicted Gene

Lj0g3v0224259.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL M5W8Q7_PRUPE 90.9 39.7 50.0 (tr|M5W8Q7) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024918mg PE=4 SV=1

TAIR_pep AT5G39710.1 82.0 43.4 57.6 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747

Medicago Medtr1g033960.1 88.6 40.4 60.6 | PPR containing plant-like protein | HC | chr1:12282466-12279095 | 20130731

Soybean Glyma20g01300.1 89.4 43.1 59.8

LJGI gnl|LJGI|TC81578 105 80.4 80.4 weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible protein-like; n=2; Arabidopsis thaliana|Rep: Salt-inducible protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0224259.1 length: 152 aa.

IPR002885 Pentatricopeptide repeat

method AccNumber shortName E-value location

HMMPfam PF13041 PPR_2 9.4e-15 64-107

HMMPfam PF13812 PPR_3 0.5 13-58

HMMTigr TIGR00756 PPR: 1.8e-06 64-95
97-131

ProfileScan PS51375 PPR 11.696 10-45
59-93
94-129

no_ID

HMMPanther PTHR24015 FAMILY 1e-31 9-142

HMMPanther PTHR24015:SF0 SUBFAMILY 1e-31 9-142

Seg seg seg NA 4-17

Wolf-PSORT

Lj0g3v0224259.1 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0224259.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	M5W8Q7_PRUPE	90.9	39.7	50.0	(tr\|M5W8Q7) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024918mg PE=4 SV=1
TAIR_pep	AT5G39710.1	82.0	43.4	57.6	\| Symbols: EMB2745 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:15895729-15897972 FORWARD LENGTH=747
Medicago	Medtr1g033960.1	88.6	40.4	60.6	\| PPR containing plant-like protein \| HC \| chr1:12282466-12279095 \| 20130731
Soybean	Glyma20g01300.1	89.4	43.1	59.8
LJGI	gnl\|LJGI\|TC81578	105	80.4	80.4	weakly similar to UniRef100_Q9LVD3 Cluster: Salt-inducible protein-like; n=2; Arabidopsis thaliana\|Rep: Salt-inducible protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (5%)

IPR002885	Pentatricopeptide repeat
Lj0g3v0224259.1				length: 152 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF13041	PPR_2	9.4e-15	64-107
HMMPfam	PF13812	PPR_3	0.5	13-58
HMMTigr	TIGR00756	PPR:	1.8e-06	64-95 97-131
ProfileScan	PS51375	PPR	11.696	10-45 59-93 94-129
no_ID
HMMPanther	PTHR24015	FAMILY	1e-31	9-142
HMMPanther	PTHR24015:SF0	SUBFAMILY	1e-31	9-142
Seg	seg	seg	NA	4-17