Miyakogusa Predicted Gene

Lj0g3v0222689.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL K7N3V6_SOYBN 1429 75.2 86.0 (tr|K7N3V6) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G59140.1 1229 65.9 78.8 | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453
Medicago Medtr6g034335.1 1462 76.7 86.0 | ABC transporter family protein | HC | chr6:11741394-11734594 | 20130731
Soybean Glyma20g30490.1 1427 75.2 86.0  
LJGI gnl|LJGI|TC70172 301 86.7 86.7 homologue to UniRef100_A7QTU6 Cluster: Chromosome undetermined scaffold_171, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_171, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0222689.1 length: 910 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2.4e-21 386-643
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 8e-19 126-236
734-857
ProfileScan PS50893 ABC_TRANSPORTER_2 12.879 86-307
693-909
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 8.9e-11 111-284
719-902
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 0.02 352-707
1-64
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 209-223
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 26.513 381-656
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.8e-50 672-904
63-293
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 8.4e-50 379-671
Gene3D G3DSA:3.40.50.300 no description 5.2e-57 90-313
692-904
HMMPanther PTHR24223 FAMILY 0 1-903
HMMPanther PTHR24223:SF107SUBFAMILY NOT 0 1-903
Seg seg seg NA 748-762
839-852
Putative transmembrane regions
  From To
TM segments
SOSUI
1 23
31 53
376 398
415 437
503 525
610 632
641 663
Wolf-PSORT
Lj0g3v0222689.1	chlo 6.5, chlo_mito 4, plas 3, nucl 2, extr 1, vacu 1, cyto_nucl 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0222689.1