Miyakogusa Predicted Gene
- Lj0g3v0220649.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A5B4T3_VITVI |
256 |
45.9 |
63.8 |
(tr|A5B4T3) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011708 PE=4 SV=1 |
| TAIR_pep |
AT1G21280.1 |
124 |
32.1 |
54.1 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237 |
| Medicago |
Medtr7g039280.1 |
89.4 |
36.4 |
54.5 |
| hypothetical protein | LC | chr7:14583454-14584237 | 20130731 |
| Soybean |
Glyma18g38660.1 |
174 |
34.1 |
55.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0220649.1 |
length: 292 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR11439 |
GAG-POL-RELATED |
3.9e-12 |
93-233 |
| HMMPfam |
PF14244 |
UBN2_3 |
1.7e-42 |
29-177 |
- Wolf-PSORT
Lj0g3v0220649.1 cyto 4, mito 4, nucl 3, chlo_mito 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0220649.1 |
Not targeted |
-58.626 |
-8.061 |
-11.591 |
87.18% |
-38.974
|