Miyakogusa Predicted Gene
- Lj0g3v0216559.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LWL4_SOYBN |
318 |
83.1 |
95.1 |
(tr|K7LWL4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G16390.1 |
259 |
68.4 |
81.6 |
| Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:7097638-7101182 FORWARD LENGTH=888 |
| Medicago |
Medtr2g437480.1 |
312 |
80.8 |
91.8 |
| chromatin remodeling complex subunit | HC | chr2:14725811-14732214 | 20130731 |
| Soybean |
Glyma12g36460.1 |
318 |
83.1 |
95.1 |
|
| LJGI |
gnl|LJGI|BW594572 |
65.9 |
93.3 |
93.3 |
similar to UniRef100_A7NXX0 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0216559.1 |
length: 183 aa. |
| IPR000330 |
SNF2-related |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00176 |
SNF2_N |
1.6e-12 |
18-163 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.8e-12 |
17-130 |
| no_ID |
|
| HMMPanther |
PTHR10799 |
SWI/SNF-RELATED |
4.6e-58 |
8-183 |
| HMMPanther |
PTHR10799:SF41 |
ATP |
4.6e-58 |
8-183 |
- Wolf-PSORT
Lj0g3v0216559.1 cyto 5.5, cyto_E.R. 4, E.R. 1.5, chlo 1, nucl 1, plas 1, extr 1, vacu 1, cysk 1, golg 1, cysk_nucl 1, nucl_plas 1, golg_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0216559.1 |
|