Miyakogusa Predicted Gene
- Lj0g3v0215559.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7LHJ0_MEDTR |
182 |
55.2 |
77.2 |
(tr|G7LHJ0) Flavonol sulfotransferase-like protein OS=Medicago truncatula GN=MTR_8g040310 PE=4 SV=1 |
| TAIR_pep |
AT1G21280.1 |
103 |
31.9 |
54.2 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237 |
| Medicago |
Medtr6g072160.1 |
62.4 |
31.4 |
44.5 |
| hypothetical protein | LC | chr6:28019617-28020512 | 20130731 |
| Soybean |
Glyma18g38660.1 |
165 |
40.4 |
66.9 |
|
| LJGI |
gnl|LJGI|TC57940 |
781 |
97.3 |
97.3 |
weakly similar to UniRef100_O23588 Cluster: Retrotransposon like protein; n=1; Arabidopsis thaliana|Rep: Retrotransposon like protein - Arabidopsis thaliana (Mouse-ear cress), partial (4%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0215559.1 |
length: 259 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF14244 |
UBN2_3 |
2.4e-36 |
4-124 |
| Seg |
seg |
seg |
NA |
197-210 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
25 |
47 |
| 115 |
137 |
| 157 |
179 |
| 202 |
224 |
| 232 |
254 |
- Wolf-PSORT
Lj0g3v0215559.1 cyto 8, nucl 2, mito 2, plas 1, E.R. 1, chlo_mito 1, cyto_mito 1, cysk_nucl 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0215559.1 |
|