Miyakogusa Predicted Gene
- Lj0g3v0215509.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A5APC0_VITVI |
181 |
98.8 |
100.0 |
(tr|A5APC0) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023640 PE=4 SV=1 |
| TAIR_pep |
AT5G27720.1 |
173 |
98.8 |
100.0 |
| Symbols: emb1644 | Small nuclear ribonucleoprotein family protein | chr5:9815904-9817304 FORWARD LENGTH=129 |
| Medicago |
Medtr7g108700.1 |
177 |
98.8 |
100.0 |
| u6 snRNA-associated-like-Smprotein | HC | chr7:44281904-44284914 | 20130731 |
| Soybean |
Glyma19g39780.1 |
175 |
98.8 |
100.0 |
|
| LJGI |
gnl|LJGI|TC76985 |
470 |
100.0 |
100.0 |
homologue to UniRef100_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (45%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0215509.1 |
length: 81 aa. |
| IPR001163 |
Ribonucleoprotein LSM domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01423 |
LSM |
3.4e-16 |
6-69 |
| IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
| HMMSmart |
SM00651 |
snRNP |
1.4e-20 |
5-71 |
| IPR010920 |
Like-Sm (LSM) domain |
| superfamily |
SSF50182 |
Sm-like |
2.3e-28 |
3-81 |
| IPR027141 |
U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 |
| HMMPanther |
PTHR23338 |
SMALL |
2.1e-52 |
1-81 |
| no_ID |
|
| Gene3D |
G3DSA:2.30.30.100 |
no description |
2.1e-36 |
1-73 |
- Wolf-PSORT
Lj0g3v0215509.1 cyto 6, chlo 2, extr 2, cysk 2, mito 1, pero 1, cysk_nucl 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0215509.1 |
|