Miyakogusa Predicted Gene

Lj0g3v0209329.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KVD4_SOYBN 823 93.2 94.8 (tr|I1KVD4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G11170.1 769 87.1 91.3 | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3553334-3556646 FORWARD LENGTH=427
Medicago Medtr4g010565.1 820 93.2 94.8 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr4:2449773-2458512 | 20130731
Soybean Glyma07g03530.1 824 93.4 95.1  
LJGI gnl|LJGI|TC58050 2539 100.0 100.0 homologue to UniRef100_Q9LFN6 Cluster: DEAD-box ATP-dependent RNA helicase 56; n=1; Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA helicase 56 - Arabidopsis thaliana (Mouse-ear cress), partial (98%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0209329.1 length: 426 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.2e-26 306-382
HMMSmart SM00490 helicase 3.8e-31 301-382
ProfileScan PS51194 HELICASE_CTER 22.664 277-422
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 5e-37 70-235
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 9.1e-53 64-265
ProfileScan PS51192 HELICASE_ATP_BIND_1 25.605 76-249
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.665 45-73
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.9e-70 112-405
no_ID  
Gene3D G3DSA:3.40.50.300 no description 8.8e-49 33-253
257-419
HMMPanther PTHR24031 FAMILY 1.1e-280 3-419
HMMPanther PTHR24031:SF75 SUBFAMILY 1.1e-280 3-419
Seg seg seg NA 8-22
Wolf-PSORT
Lj0g3v0209329.1	cyto 6, nucl 5, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0209329.1