Miyakogusa Predicted Gene

Lj0g3v0208019.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NE13_SOYBN 731 80.0 82.8 (tr|I1NE13) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G07360.1 628 79.2 87.2 | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481
Medicago Medtr3g079200.1 702 90.7 94.1 | zinc finger CCCH domain protein | HC | chr3:35625559-35621770 | 20130731
Soybean Glyma20g10260.1 731 80.0 82.8  
LJGI gnl|LJGI|TC63476 1739 100.0 100.0 homologue to UniRef100_A7NYL7 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (63%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0208019.1 length: 485 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.6e-13 230-286
HMMSmart SM00360 RNA 6.1e-17 229-297
ProfileScan PS50102 RRM 15.306 228-301
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00356 zinc 7.2e-06 157-183
ProfileScan PS50103 ZF_C3H1 14.126 157-184
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.5e-17 220-310
no_ID  
HMMPanther PTHR14089 CELL 4.6e-254 1-451
HMMPanther PTHR14089:SF6 SUBFAMILY 4.6e-254 1-451
Seg seg seg NA 274-284
374-389
392-436
458-479
superfamily SSF54928 RNA-binding 1.1e-20 221-320
superfamily SSF90229 CCCH 1.6e-06 155-183
Wolf-PSORT
Lj0g3v0208019.1	mito 4.5, nucl 4, chlo 3, cyto_nucl 3, cyto_mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0208019.1