Miyakogusa Predicted Gene
- Lj0g3v0207129.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7M5B1_SOYBN |
706 |
83.0 |
90.9 |
(tr|K7M5B1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G13980.2 |
645 |
77.0 |
87.6 |
| Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451 |
| Medicago |
Medtr5g080650.1 |
693 |
81.8 |
89.9 |
| pattern formation protein GNOM protein | HC | chr5:34512394-34520250 | 20130731 |
| Soybean |
Glyma14g07230.1 |
704 |
83.0 |
90.9 |
|
| LJGI |
gnl|LJGI|DC599912 |
371 |
84.8 |
84.8 |
homologue to UniRef100_A7PC51 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0207129.1 |
length: 395 aa. |
| IPR000904 |
SEC7-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005086 |
ARF guanyl-nucleotide exchange factor activity |
|
|
| Biological Process |
GO:0032012 |
regulation of ARF protein signal transduction |
|
|
| HMMPfam |
PF01369 |
Sec7 |
1.3e-63 |
65-248 |
| HMMSmart |
SM00222 |
Sec7 |
7.1e-90 |
61-248 |
| ProfileScan |
PS50190 |
SEC7 |
38.265 |
57-246 |
| superfamily |
SSF48425 |
Sec7 |
1.7e-71 |
60-253 |
| IPR023394 |
SEC7-like, alpha orthogonal bundle |
| Gene3D |
G3DSA:1.10.1000.11 |
no description |
9.4e-46 |
140-253 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.220.20 |
no description |
1.1e-23 |
52-139 |
| HMMPanther |
PTHR10663 |
GUANYL-NUCLEOTIDE |
1.2e-232 |
1-395 |
| HMMPanther |
PTHR10663:SF6 |
PATTERN |
1.2e-232 |
1-395 |
| Seg |
seg |
seg |
NA |
219-229 |
- Wolf-PSORT
Lj0g3v0207129.1 plas 4, E.R. 4, E.R._plas 4, nucl 1, cyto 1, mito 1, extr 1, vacu 1, golg 1, cyto_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0207129.1 |
|