Miyakogusa Predicted Gene
- Lj0g3v0205909.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SMT1_LOTJA |
738 |
99.2 |
99.7 |
(tr|I3SMT1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G49610.1 |
501 |
67.0 |
80.5 |
| Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359 |
| Medicago |
Medtr2g033410.1 |
656 |
87.3 |
93.1 |
| F-box protein interaction domain protein | HC | chr2:12699392-12701048 | 20130731 |
| Soybean |
Glyma09g03750.1 |
679 |
90.0 |
95.8 |
|
| LJGI |
gnl|LJGI|TC63209 |
2149 |
100.0 |
100.0 |
similar to UniRef100_A7Q8U1 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (95%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0205909.1 |
length: 360 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00256 |
A |
1.1e-07 |
9-49 |
| ProfileScan |
PS50181 |
FBOX |
9.074 |
9-52 |
| superfamily |
SSF81383 |
F-box |
1.3e-11 |
9-283 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
5.6e-20 |
99-324 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
5.4e-10 |
9-45 |
| HMMPfam |
PF12937 |
F-box-like |
3.8e-07 |
10-43 |
- Wolf-PSORT
Lj0g3v0205909.1 cyto 9, nucl 2, chlo 1, mito 1, cysk 1, chlo_mito 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0205909.1 |
Not targeted |
-36.077 |
-0.353 |
-4.712 |
44.19% |
-31.012
|