Miyakogusa Predicted Gene

Lj0g3v0205559.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IUG4_MEDTR 2553 84.3 91.3 (tr|G7IUG4) Bifunctional protein aas OS=Medicago truncatula GN=MTR_2g098490 PE=4 SV=1
TAIR_pep AT4G05160.1 94.0 26.2 43.2 | Symbols: | AMP-dependent synthetase and ligase family protein | chr4:2664451-2666547 FORWARD LENGTH=544
Medicago Medtr2g098490.1 2491 83.4 90.4 | AMP-binding enzyme | HC | chr2:42131459-42123120 | 20130731
Soybean Glyma13g41760.1 957 78.1 83.7  
LJGI gnl|LJGI|TC60804 622 86.7 86.7 similar to UniRef100_A7NZW0 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0205559.1 length: 1488 aa.
IPR000873 AMP-dependent synthetase/ligase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00501 AMP-binding 1.1e-78 527-974
IPR001451 Bacterial transferase hexapeptide repeat
HMMPfam PF00132 Hexapep 0.001 1401-1429
IPR006162 Phosphopantetheine attachment site
PatternScan PS00012 PHOSPHOPANTETHEINE NA 1144-1159
IPR009081 Acyl carrier protein-like
Gene3D G3DSA:1.10.1200.10 no description 3.1e-09 1114-1208
HMMPfam PF00550 PP-binding 8.4e-08 1120-1184
ProfileScan PS50075 ACP_DOMAIN 15.257 1117-1186
superfamily SSF47336 ACP-like 1.4e-11 1110-1207
IPR011004 Trimeric LpxA-like
Molecular Function GO:0016740 transferase activity    
superfamily SSF51161 Trimeric 8.7e-08 1323-1436
IPR020806 Polyketide synthase, phosphopantetheine-binding domain
Molecular Function GO:0031177 phosphopantetheine binding    
HMMSmart SM00823 Phosphopantetheine 0.0014 1118-1189
IPR020845 AMP-binding, conserved site
PatternScan PS00455 AMP_BINDING NA 680-691
no_ID  
FPrintScan PR00419 ADXRDTASE 4.2e-08 23-45
47-60
Gene3D G3DSA:2.160.10.10 no description 3.9e-08 1351-1431
Gene3D G3DSA:2.30.38.10 no description 5.5e-12 868-944
Gene3D G3DSA:3.30.300.30 no description 3.3e-12 945-1062
Gene3D G3DSA:3.40.50.980 no description 2.9e-32 519-685
686-842
Gene3D G3DSA:3.50.50.60 no description 1.6e-42 184-268
HMMPanther PTHR22754 DISCO-INTERACTING 5.9e-129 506-1081
HMMPanther PTHR22754:SF4 ACYL-COA 5.9e-129 506-1081
HMMPfam PF13450 NAD_binding_8 4.4e-15 26-91
Seg seg seg NA 1471-1486
superfamily SSF51905 FAD/NAD(P)-binding 9.1e-27 7-343
superfamily SSF56801 Acetyl-CoA 4.7e-90 493-1091
Putative transmembrane regions
  From To
TM segments
SOSUI		 1230 1252
1276 1298
Wolf-PSORT
Lj0g3v0205559.1	plas 6, vacu 2, E.R. 2, E.R._vacu 2, nucl 1, cyto 1, mito 1, golg 1, cyto_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0205559.1