Miyakogusa Predicted Gene
- Lj0g3v0204359.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MJJ7_SOYBN |
242 |
93.3 |
96.7 |
(tr|K7MJJ7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G28290.3 |
222 |
84.2 |
93.3 |
| Symbols: SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12056771-12072950 FORWARD LENGTH=3543 |
| Medicago |
Medtr4g118720.1 |
235 |
90.0 |
95.0 |
| SNF2 family amine-terminal protein | HC | chr4:49190490-49169826 | 20130731 |
| Soybean |
Glyma17g02540.1 |
241 |
93.3 |
96.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0204359.1 |
length: 120 aa. |
| IPR021006 |
Histone deacetylase complex, subunit 2/3 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF11496 |
HDA2-3 |
2.6e-06 |
16-110 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.5e-13 |
15-120 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
0.00023 |
60-116 |
| HMMPanther |
PTHR10799 |
SWI/SNF-RELATED |
1e-45 |
12-120 |
| HMMPanther |
PTHR10799:SF209GLOBAL |
TRANSCRIPTION |
1e-45 |
12-120 |
- Wolf-PSORT
Lj0g3v0204359.1 cyto 7, mito 2, nucl 1, plas 1, extr 1, pero 1, cysk 1, chlo_mito 1, cyto_mito 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0204359.1 |
|