Miyakogusa Predicted Gene

Lj0g3v0203979.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K8F2_MEDTR 294 43.2 59.7 (tr|G7K8F2) Cc-nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_5g092190 PE=4 SV=1

TAIR_pep AT1G72910.1 118 37.9 59.2 | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr1:27435634-27436887 FORWARD LENGTH=380

Medicago Medtr5g092190.1 285 44.7 60.6 | disease resistance protein (TIR-NBS-LRR class) | LC | chr5:40265309-40256638 | 20130731

Soybean Glyma12g03040.1 164 48.9 66.7

LJGI gnl|LJGI|TC82420 587 99.7 99.7 weakly similar to UniRef100_A3QVH0 Cluster: Toll interleukin receptor; n=1; Phaseolus vulgaris|Rep: Toll interleukin receptor - Phaseolus vulgaris (Kidney bean) (French bean), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0203979.1 length: 428 aa.

IPR000157 Toll/interleukin-1 receptor homology (TIR) domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Biological Process GO:0007165 signal transduction

HMMPfam PF01582 TIR 8e-32 248-378

HMMSmart SM00255 Toll 1.6e-35 244-383

ProfileScan PS50104 TIR 22.023 243-383

superfamily SSF52200 Toll/Interleukin 9.8e-32 233-386

IPR002182 NB-ARC

Molecular Function GO:0043531 ADP binding

HMMPfam PF00931 NB-ARC 3.4e-23 31-242

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 5.4e-12 30-238

no_ID

Gene3D G3DSA:3.40.50.10140 no description 2e-18 242-359

Gene3D G3DSA:3.40.50.300 no description 7e-08 31-132

HMMPanther PTHR11017 LEUCINE-RICH 2.2e-37 133-386

HMMPanther PTHR11017:SF130DISEASE RESISTANCE 2.2e-37 133-386

Seg seg seg NA 2-17
49-64

Putative transmembrane regions

From To

TM segments
SOSUI 2 23

Wolf-PSORT

Lj0g3v0203979.1 extr 3, vacu 3, chlo 2, plas 2, E.R. 2, E.R._plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0203979.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K8F2_MEDTR	294	43.2	59.7	(tr\|G7K8F2) Cc-nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_5g092190 PE=4 SV=1
TAIR_pep	AT1G72910.1	118	37.9	59.2	\| Symbols: \| Toll-Interleukin-Resistance (TIR) domain-containing protein \| chr1:27435634-27436887 FORWARD LENGTH=380
Medicago	Medtr5g092190.1	285	44.7	60.6	\| disease resistance protein (TIR-NBS-LRR class) \| LC \| chr5:40265309-40256638 \| 20130731
Soybean	Glyma12g03040.1	164	48.9	66.7
LJGI	gnl\|LJGI\|TC82420	587	99.7	99.7	weakly similar to UniRef100_A3QVH0 Cluster: Toll interleukin receptor; n=1; Phaseolus vulgaris\|Rep: Toll interleukin receptor - Phaseolus vulgaris (Kidney bean) (French bean), partial (11%)

IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Lj0g3v0203979.1				length: 428 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Biological Process	GO:0007165	signal transduction
HMMPfam	PF01582	TIR	8e-32	248-378
HMMSmart	SM00255	Toll	1.6e-35	244-383
ProfileScan	PS50104	TIR	22.023	243-383
superfamily	SSF52200	Toll/Interleukin	9.8e-32	233-386
IPR002182	NB-ARC
Molecular Function	GO:0043531	ADP binding
HMMPfam	PF00931	NB-ARC	3.4e-23	31-242
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	5.4e-12	30-238
no_ID
Gene3D	G3DSA:3.40.50.10140	no description	2e-18	242-359
Gene3D	G3DSA:3.40.50.300	no description	7e-08	31-132
HMMPanther	PTHR11017	LEUCINE-RICH	2.2e-37	133-386
HMMPanther	PTHR11017:SF130DISEASE	RESISTANCE	2.2e-37	133-386
Seg	seg	seg	NA	2-17 49-64