Miyakogusa Predicted Gene
- Lj0g3v0202109.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SYC8_LOTJA |
156 |
75.5 |
78.3 |
(tr|I3SYC8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G55850.1 |
70.5 |
43.0 |
54.0 |
| Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729 |
| Medicago |
Medtr3g060280.4 |
118 |
59.2 |
63.1 |
| cellulose synthase E1-like protein | HC | chr3:23658243-23652185 | 20130731 |
| Soybean |
Glyma08g44320.2 |
125 |
63.7 |
68.6 |
|
| LJGI |
gnl|LJGI|TC75688 |
638 |
100.0 |
100.0 |
similar to UniRef100_A7Q9A1 Cluster: Chromosome chr19 scaffold_66, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_66, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0202109.1 |
length: 108 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR32287 |
FAMILY |
8.4e-20 |
9-107 |
| HMMPanther |
PTHR32287:SF13 |
SUBFAMILY |
8.4e-20 |
9-107 |
| Seg |
seg |
seg |
NA |
57-71 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
21 |
43 |
| 57 |
79 |
- Wolf-PSORT
Lj0g3v0202109.1 nucl 8.5, cysk_nucl 5, cyto 2, chlo 1, extr 1, pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0202109.1 |
|