Miyakogusa Predicted Gene

Lj0g3v0201979.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH84_SOYBN 523 79.4 87.5 (tr|I1NH84) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G71840.1 441 65.0 81.0 | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407
Medicago Medtr1g097140.1 441 68.4 78.0 | vegetative incompatibility HET-E-like protein | HC | chr1:43824050-43816450 | 20130731
Soybean Glyma20g31330.3 523 79.4 87.5  
LJGI gnl|LJGI|TC60154 1869 100.0 100.0 similar to UniRef100_A7QLT1 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0201979.1 length: 344 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.4e-07 56-88
102-135
139-176
186-218
234-261
269-305
315-344
HMMSmart SM00320 WD40 1.3 53-93
96-135
137-176
179-218
221-263
266-305
308-344
ProfileScan PS50082 WD_REPEATS_2 10.174 103-135
144-185
186-227
273-314
314-344
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.6e-71 57-344
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 47.747 60-344
superfamily SSF50978 WD40 2.2e-68 10-344
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 163-177
292-306
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 4.7e-06 122-136
163-177
205-219
no_ID  
HMMPanther PTHR19857 FAMILY 2.5e-162 11-344
HMMPanther PTHR19857:SF16 TRANSDUCIN 2.5e-162 11-344
Seg seg seg NA 3-26
Wolf-PSORT
Lj0g3v0201979.1	cyto 7, cysk 3, nucl 2, pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0201979.1