Miyakogusa Predicted Gene

Lj0g3v0199579.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9N789_POPTR 978 68.1 75.2 (tr|B9N789) Cl-channel clc-7 OS=Populus trichocarpa GN=POPTRDRAFT_811492 PE=4 SV=1
TAIR_pep AT5G49890.1 940 64.4 71.7 | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779
Medicago Medtr4g134730.1 1039 72.9 77.7 | chloride channel ClC1 protein | HC | chr4:56472038-56468646 | 20130731
Soybean Glyma09g28620.1 773 59.6 67.3  
LJGI gnl|LJGI|TC72370 77.8 79.9 79.9 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined scaffold_147, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_147, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0199579.1 length: 732 aa.
IPR000644 Cystathionine beta-synthase, core
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00571 CBS 0.0032 553-613
670-717
ProfileScan PS51371 CBS 9.485 556-618
668-731
IPR001807 Chloride channel, voltage gated
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
FPrintScan PR00762 CLCHANNEL 3.3e-62 118-135
149-168
213-232
439-459
471-487
489-508
527-541
HMMPfam PF00654 Voltage_CLC 1.3e-88 105-521
IPR002251 Chloride channel ClC-plant
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01120 CLCHANNELPLT 5.6e-23 23-31
234-242
248-258
266-273
391-407
IPR014743 Chloride channel, core
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0055085 transmembrane transport    
Gene3D G3DSA:1.10.3080.10 no description 1.2e-122 395-545
superfamily SSF81340 Clc 8.7e-102 26-544
no_ID  
Gene3D G3DSA:3.10.580.10 no description 1.4e-10 655-718
HMMPanther PTHR11689 CHLORIDE 0 1-727
HMMPanther PTHR11689:SF11 CHLORIDE 0 1-727
Seg seg seg NA 211-227
246-256
294-308
471-484
492-515
599-612
681-697
superfamily SSF54631 CBS-domain 3.9e-08 660-718
541-623
Putative transmembrane regions
  From To
TM segments
SOSUI		 45 67
96 118
139 161
209 231
240 262
291 313
331 353
423 445
460 482
496 518
Wolf-PSORT
Lj0g3v0199579.1	plas 8, vacu 2, golg 2, chlo 1, extr 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0199579.1