Miyakogusa Predicted Gene

Lj0g3v0198719.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6T824_SOYBN 742 85.5 91.5 (tr|C6T824) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT3G61490.3 599 67.5 83.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476
Medicago Medtr1g100050.1 700 81.5 88.5 | pectin lyase superfamily protein | HC | chr1:45079785-45077811 | 20130731
Soybean Glyma16g29780.1 742 85.5 91.5  
LJGI gnl|LJGI|TC70052 1033 98.4 98.4 similar to UniRef100_Q2HUV5 Cluster: Glycoside hydrolase, family 28; n=1; Medicago truncatula|Rep: Glycoside hydrolase, family 28 - Medicago truncatula (Barrel medic), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0198719.1 length: 428 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 2.4e-33 149-418
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 3.9e-96 31-427
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 1.3e-104 60-425
no_ID  
HMMPanther PTHR31339 FAMILY 2.6e-173 4-412
HMMPanther PTHR31339:SF0 SUBFAMILY 2.6e-173 4-412
Putative transmembrane regions
  From To
TM segments
SOSUI		 4 26
83 105
Wolf-PSORT
Lj0g3v0198719.1	vacu 5, E.R. 3, extr 2, E.R._plas 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0198719.1