Miyakogusa Predicted Gene
- Lj0g3v0198599.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1NCZ8_SOYBN |
147 |
98.6 |
100.0 |
(tr|I1NCZ8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G02090.1 |
140 |
92.9 |
98.6 |
| Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:523481-526884 FORWARD LENGTH=763 |
| Medicago |
Medtr1g035330.1 |
144 |
95.8 |
98.6 |
| ATP-dependent helicase family protein | HC | chr1:12827792-12817494 | 20130731 |
| Soybean |
Glyma20g00830.1 |
147 |
98.6 |
100.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0198599.2 |
length: 71 aa. |
| IPR000330 |
SNF2-related |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00176 |
SNF2_N |
5.6e-16 |
1-60 |
| IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
| ProfileScan |
PS51192 |
HELICASE_ATP_BIND_1 |
12.779 |
1-53 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.7e-17 |
1-67 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
3.3e-06 |
1-50 |
| HMMPanther |
PTHR10799 |
SWI/SNF-RELATED |
1.2e-34 |
1-71 |
| HMMPanther |
PTHR10799:SF271SUBFAMILY |
NOT |
1.2e-34 |
1-71 |
- Wolf-PSORT
Lj0g3v0198599.2 cyto 5.5, mito 5, cyto_E.R. 3.5, chlo 1, nucl 1, extr 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0198599.2 |
|