Miyakogusa Predicted Gene

Lj0g3v0198239.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JD38_SOYBN 794 85.5 90.8 (tr|I1JD38) Uncharacterized protein OS=Glycine max PE=3 SV=2

TAIR_pep AT2G01630.1 687 74.4 83.9 | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:279541-281955 REVERSE LENGTH=501

Medicago Medtr1g031900.1 796 83.4 90.2 | glucan endo-1,3-beta-glucosidase-like protein | HC | chr1:11212777-11208090 | 20130731

Soybean Glyma02g07730.1 788 85.9 91.4

LJGI gnl|LJGI|BP057569 351 100.0 100.0 similar to UniRef100_Q94EN5 Cluster: Beta-1,3-glucanase; n=1; Camellia sinensis|Rep: Beta-1,3-glucanase - Camellia sinensis (Tea), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0198239.1 length: 464 aa.

IPR000490 Glycoside hydrolase, family 17

method AccNumber shortName E-value location

Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process GO:0005975 carbohydrate metabolic process

HMMPfam PF00332 Glyco_hydro_17 7.6e-87 24-344

PatternScan PS00587 GLYCOSYL_HYDROL_F17 NA 258-271

IPR012946 X8

HMMPfam PF07983 X8 1.3e-16 361-431

HMMSmart SM00768 Possibly 6.5e-49 360-445

IPR013781 Glycoside hydrolase, catalytic domain

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0005975 carbohydrate metabolic process

Gene3D G3DSA:3.20.20.80 no description 2.6e-113 24-344

IPR017853 Glycoside hydrolase, superfamily

superfamily SSF51445 (Trans)glycosidases 1.6e-89 24-345

no_ID

HMMPanther PTHR32227 FAMILY 3.7e-303 1-456

HMMPanther PTHR32227:SF31 SUBFAMILY 3.7e-303 1-456

Seg seg seg NA 4-12
238-249

Putative transmembrane regions

From To

TM segments
SOSUI 1 23

58 80

126 148

Wolf-PSORT

Lj0g3v0198239.1 E.R. 5.5, E.R._plas 4.5, chlo 3, plas 2.5, nucl 1, mito 1, extr 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0198239.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JD38_SOYBN	794	85.5	90.8	(tr\|I1JD38) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep	AT2G01630.1	687	74.4	83.9	\| Symbols: \| O-Glycosyl hydrolases family 17 protein \| chr2:279541-281955 REVERSE LENGTH=501
Medicago	Medtr1g031900.1	796	83.4	90.2	\| glucan endo-1,3-beta-glucosidase-like protein \| HC \| chr1:11212777-11208090 \| 20130731
Soybean	Glyma02g07730.1	788	85.9	91.4
LJGI	gnl\|LJGI\|BP057569	351	100.0	100.0	similar to UniRef100_Q94EN5 Cluster: Beta-1,3-glucanase; n=1; Camellia sinensis\|Rep: Beta-1,3-glucanase - Camellia sinensis (Tea), partial (11%)

IPR000490	Glycoside hydrolase, family 17
Lj0g3v0198239.1				length: 464 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process	GO:0005975	carbohydrate metabolic process
HMMPfam	PF00332	Glyco_hydro_17	7.6e-87	24-344
PatternScan	PS00587	GLYCOSYL_HYDROL_F17	NA	258-271
IPR012946	X8
HMMPfam	PF07983	X8	1.3e-16	361-431
HMMSmart	SM00768	Possibly	6.5e-49	360-445
IPR013781	Glycoside hydrolase, catalytic domain
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0005975	carbohydrate metabolic process
Gene3D	G3DSA:3.20.20.80	no description	2.6e-113	24-344
IPR017853	Glycoside hydrolase, superfamily
superfamily	SSF51445	(Trans)glycosidases	1.6e-89	24-345
no_ID
HMMPanther	PTHR32227	FAMILY	3.7e-303	1-456
HMMPanther	PTHR32227:SF31	SUBFAMILY	3.7e-303	1-456
Seg	seg	seg	NA	4-12 238-249