Miyakogusa Predicted Gene
- Lj0g3v0196769.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KE43_SOYBN |
401 |
83.8 |
90.4 |
(tr|I1KE43) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G21570.1 |
324 |
68.3 |
81.0 |
| Symbols: | Protein of unknown function (DUF300) | chr4:11471126-11472269 REVERSE LENGTH=294 |
| Medicago |
Medtr4g050765.1 |
334 |
71.0 |
85.5 |
| organic solute transporter ostalpha protein | HC | chr4:18019354-18022155 | 20130731 |
| Soybean |
Glyma06g39620.1 |
401 |
83.8 |
90.4 |
|
| LJGI |
gnl|LJGI|CB829110 |
1120 |
99.8 |
99.8 |
similar to UniRef100_A7R7M0 Cluster: Chromosome undetermined scaffold_1864, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1864, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0196769.1 |
length: 245 aa. |
| IPR005178 |
Organic solute transporter Ost-alpha |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR23423 |
ORGANIC |
5.1e-68 |
6-221 |
| HMMPfam |
PF03619 |
Solute_trans_a |
2.7e-66 |
6-224 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
177-190 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
6 |
28 |
| 41 |
63 |
| 72 |
94 |
| 144 |
165 |
| 173 |
195 |
| 213 |
235 |
- Wolf-PSORT
Lj0g3v0196769.1 extr 4, cyto 2, vacu 2, golg 2, chlo 1, mito 1, plas 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cyto_pero 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0196769.1 |
|